EFTA02443859

Publications of the Program for Evolutionary Dynamics at Harvard University 2003 I. Frank SA, Y Iwasa, MA Nowak (2003). Patterns of cell division and the risk of cancer. Genetics 163: 1527-1532. 2. Frank SA, MA Nowak (2003). Developmental predisposition to cancer. Nature 422: 494. 3. Hudson R R, Turelli M (2003). Stochasticity overrules the "three-times rule": Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondria! DNA. Evolution 57: 182-190. 4. Iwasa Y, F Michor, MA Nowak (2003). Evolutionary dynamics of escape from biomedical intervention. Proc R Soc B 270: 2573-2578. 5. Jones AG, SJ Arnold, R Burger (2003). Stability of the G-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift. Evolution 57: 1747- 1760. 6. Komarova NL, MA Nowak (2003). Language dynamics in finite populations. J theor Biol 221: 445457. 7. Komarova NL, MA Nowak (2003). Language, learning and evolution. In Language Evolution, eds. MH Christiansen, S Kirby. Oxford University Press, 317-337. 8. Komarova NL, A Sengupta, MA Nowak (2003). Mutation-selection networks of cancer initiation: Tumor suppressor genes and chromosomal instability. J theor Biol 223: 433-450. 9. Lorenz A, J Fuchs, R Burger, J Loidl (2003). Chromosome pairing does not contribute to nuclear architecture in vegetative yeast cells. Eulcaryotic Cell 2: 856-866. 10. Michor F, SA Frank, RM May, Y Iwasa, MA Nowak (2003). Somatic selection for and against cancer. I theor Biol 225: 377-382. II. Michor F, Y Iwasa, NL Komarova, MA Nowak (2003). Local regulation of homeostasis favors chromosomal instability. Curr Biol 13: 581-584. 12. Michor F, MA Nowak, SA Frank, Y Iwasa (2003). Stochastic elimination of cancer cells. Proc R Soc B 270: 2017-2024. 13. Mitchener G, MA Nowak (2003). Competitive exclusion and coexistence of universal grammars. B Math Biol 65: 67-93. 14. Nowak MA, F Michor, Y Iwasa (2003). The linear process of somatic evolution. P Nail Acad Sci USA 100: 14966-14969. 15. Rajagopalan H, MA Nowak, B Vogelstein, C Lengauer (2003). The significance of unstable chromosomes in colorectal cancer. Nat Rev Cancer 3: 695-701. 16. Sasaki A, MA Nowak (2003). Mutation landscapes. J theor Biol 224: 241-247. 17. Wei X, JM Decker, S Wang, H Hui, JC Kappes, W Xiaoyun, JF Salazar, MG Salazar, JM Kilby, MS Saag, NL Komarova, MA Nowak, BH Hahn, PD Kwong, GM Shaw (2003). Antibody neutralization and escape by HIV-1. Nature 422: 307-312. 18. Willensdorfer M, R Burger (2003). The two-locus model of Gaussian stabilizing selection. Theor Popul Biol 64: 101-117. 2004 19. Barton NH, M Turelli (2004). Effects of genetic drift on variance components under a general model of epistasis. Evolution 58: 2111-2132. 20. Boots M, PJ Hudson, A Sasaki (2004). Large shifts in pathogen virulence relate to host population structure. Science 303: 842-845. 21. Burger R, A Gimelfarb (2004). The effects of intraspecific competition and stabilizing selection on a polygenic trait. Genetics 167: 1425-1443. Page 1 of 16 EFTA_R1_01519425 EFTA02443859 22. Burger R, C Krall (2004). Quantitative genetic models and changing environments. In Evolutionary Conservation Biology, cds. R Fcrricrc, U Dicckmann, D Couvet. Cambridge: Cambridge University Press, 171-186. 23. Doebeli M, C Haucrt, T Killingback (2004). The evolutionary origin of cooperators and defectors. Science 306: 859-862. 24. Frank SA (2004). Age-specific acceleration of cancer. Curr Biol 14: 242-246. 25. Frank SA, MA Nowak (2004). Problems of somatic mutation and cancer. Bioessays 26: 291- 299. 26. Frankham, R (2004). Evolutionary conservation genetics. In Evolutionary Genetics: Concepts and Case Studies, eds. CW Fox, JB Wolf. New York: Oxford University Press. 27. Frankham R, JD Ballou, DA Briscoe (2004). A Primer of Conservation Genetics. Cambridge: Cambridge University Press. 28. Frankham R, BW Brook (2004). The importance of time scale in conservation biology and ecology. Annalcs Zoologici Fennici 41: 459-463. 29. Frankham R, JG Kingslover (2004). Adaptation and extinction: The empirical view. In Evolutionary Conservation Biology, eds. R Ferriere, U Dieckmann, D Couvet. Cambridge: Cambridge University Press. 30. Ganapathy G, V Ramachandran, T Wamow (2004). On contract-and-refine-transformations between phylogenefic trees. In Proceedings of the Fifteenth ACM-SIAM Symposium on Discrete Algorithms (SODA), 893-902. 31. Iwasa Y, F Michor, MA Nowak (2004). Evolutionary dynamics of invasion and escape. J thcor Biol 226: 205-214. 32. Iwasa Y, F Michor, MA Nowak (2004). Some basic properties of immune selection. J theor Biol 229: 179-188. 33. Iwasa Y, F Michor, MA Nowak (2004). Stochastic tunnels in evolutionary dynamics. Genetics 166: 1571-1579. 34. Jones AG, SJ Arnold, R Bilrger (2004). Evolution and stability of the G-matrix on a landscape with a moving optimum. Evolution 58: 1639-1654. 35. Jones NA, X Wei, D Flower, M Wong, F Michor, M Saag, B Hahn, M Nowak, G Shaw (2004). Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic Y lymphocyte response. J Exp Math 200: 1243-1256. 36. Matsen E, MA Nowak (2004). Win-stay, lose-shift in language learning from peers. P Natl Acad Sci USA 101: 18053-18057. 37. Michor F, Y Iwasa, MA Nowak (2004). Dynamics of cancer progression. Nat Rev Cancer 4: 197-205. 38. Michor F, Y Iwasa, H Rajagopalan, C Lengauer, MA Nowak (2004). Linear model of colon cancer initiation. Cell Cycle 3: 358-362. 39. Mitchener WG, MA Nowak (2004). Chaos and language. Proc R Soc B 271: 701-704. 40. Moret BME, L Nakhleh, T Wamow, CR Linder, A Tholse, A Padolina, J Sun, R Timme (2004). Phylogenetic networks: Modeling, reconstructibility, and accuracy. IEEE T Comput Biol Biocomp I: 13-23. 41. Moret BME, U Roshan, T Wamow, TL Williams (2004). Performance of supertree methods on various dataset decompositions. In Phylogenetic Supertrees, ed. ORP Bininda-Edmonds. Dordrecht, Netherlands: Kluwer Academic Publishers, 301-328. 42. Nakhleh L, T Wamow, CR Linder (2004). Reconstructing reticulate evolution in species — theory and practice. In Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology (RECOMB), 337-346. 43. Nowak MA (2004). Prisoners of the dilemma. Nature 427: 491. 44. Nowak MA (2004) Theory is available light. Curr Biol 14: R406-R407. 45. Nowak MA, F Michor, Y Iwasa (2004). Evolutionary dynamics of tumor suppressor gene inactivation. P Natl Acad Sci USA 101: 10635-10638. Page 2 of 16 EFTA_R1_01519426 EFTA02443860 46. Nowak MA, A Sasaki, C Taylor, D Fudenberg (2004). Emergence of cooperation and evolutionary stability in finite populations. Nature 428: 646-650. 47. Nowak MA, K Sigmund (2004). Evolutionary dynamics of biological games. Science 303: 793-799. 48. Nowak MA, K Sigmund (2004). Population dynamics in evolutionary ecology. In Life Sciences for the 21st Century, eds. E Kcinan, I Schechter, M Sela. Weinheim: Wiley-VCH Verlag GmbH & Co. 49. O'Grady JJ, MA Burgman, DA Keith, LL Master, SJ Andelman, BW Brook, GA Hammerson, T Regan, R Frankham (2004). Correlations among extinction risks assessed by different systcms of threatened species categorization. Consery Biol 18: 1624-1635. 50. O'Grady JJ, DH Reed, BW Brook, R Frankham (2004). What are the best correlates of predicted extinction risk? Biol Consery 118: 513-520. 51. Reed DH, JJ O'Grady, BW Brook, JD Ballou, R Frankham (2004). Large estimates of minimum viable population sizes. Consery Biol 18: 1179. 52. Roshan U, BME Moret, 'It Williams, T Warnow (2004). Rec-I-DCM3: A fast algorithmic technique for reconstructing large phylogenetic trees. In Proc. IEEE Computer Society Bioinformatics Conference CSB 2004. Stanford: Stanford University Press. 53. Spielman D, BW Brook, It Frankham (2004). Does inbreeding and loss of genetic diversity decrease disease resistance? Consery Gen 5: 439-448. 54. Spielman D, BW Brook, R Frankham (2004). Most species are not driven to extinction before genetic factors impact them. P Natl Acad Sci USA 101: 15261-15264. 55. Taylor C, D Fudenberg, A Sasaki, MA Nowak (2004). Evolutionary game dynamics in finite populations. B Math Biol 66: 1621-1644. 56. Turelli M, NH Barton (2004). Polygenic variation maintained by balancing selection: Pleiotropy, sex-dependent allelic effects and G x E interactions. Genetics 166: 1053-1079. 57. Wang L, T Warnow (2004). Distance-based genome rearrangement phylogeny. In Mathematics of Evolution and Phylogeny, ed. O Gascucl. Ox ford: Oxford University Press. 58. Wamow T, SN Evans, D Range, L Nakhleh (2004). Stochastic models of language evolution and an application to the Indo-European family of languages. In Proceedings of the Conference on Phylogenetic Methods and the Prehistory of Languages. Cambridge: Cambridge University Press. 59. Whitlock MC, R Burger (2004). The good, the bad, and the ugly: Fixation of new mutations in small populations. In Evolutionary Conservation Biology, eds. R Ferriere, U Dieckmann, D Couvet. Cambridge: Cambridge University Press. 60. Wodarz D, N Komarova, Y Iwasa (2004). On the emergence of multifocal cancers. J Carcinogenesis 3: 13. 2005 61. Burger R (2005). A multilocus analysis of intraspecific competition and stabilizing selection on a quantitative trait. J Math Biol 50: 355-396. 62. Boeckx C, M Piattelli-Palmarini (2005). Language as a natural object, linguistics as a natural science. Linguist Rev 22: 351-370. 63. 63.Brown WM, L Cronk, K Grochow, A Jacobson, CK Liu, Z Popovik, R Travers (2005). Dance reveals symmetry especially in young men. Nature 438: T148-T150. 64. Claussen J, Traulsen A (2005). Nongaussian fluctuations arising from finite populations: Exact results for the evolutionary Moran process. Phys Rev E 71: 025101. 65. Docbeli M, C Hauert (2005). Models of cooperation based on the Prisoner's Dilemma and the Snowdrift game. Ecol Lett 8: 748-766. Page 3 of 16 EFTA_R1_01519427 EFTA02443861 66. Feugier FG, A Mochizuki, Y Iwasa (2005). Self-organizing formation of vascular system of plant leaves: Co-orientation between auxin flux and pump proteins.) thcor Biol 236: 366- 375. 67. Gerhart J, C Lowe, M Kirschner (2005). Hcmichordatcs and the origin of chordates. Curr Opin Genet Dev 15: 461-467. Gilligan DM, DA Briscoe, R Frankham (2005). Comparative losses of quantitative and molecular genetic variation in finite populations of Drosophila melanogaster. Genet Res 85: 47-55. 68. Gilligan DM, DA Briscoe, R Frankham (2005). Comparative losses of quantitative and molecular genetic variation in finite populations of Drosophila melanogaster. Genet Res 85: 47-55. 69. Hale J, EP Stabler (2005). Strict deterministic aspects of minimalist grammars. In Logical Aspects of Computational Linguistics, ed. P Blachc et al. Springer LNCS-3492, 162-176. 70. Hauert C, G Szabo (2005). Game theory and physics. Am J Phys 73: 405-414. 71. Imhof LA (2005). Evolutionary game dynamics under stochastic influences. Jahresbericht der DMV 107: 197-213. 72. Imhof LA (2005). The long-run behavior of the stochastic replicator dynamics. Ann Appl Probab 15: 1019-1045. 73. Imhof LA, D Fudenberg, MA Nowak (2005). Evolutionary cycles of cooperation and defection. P Natl Acad Sci USA 102: 10797-10800. 74. Imhof LA, S Walcher (2005). Exclusion and persistence in deterministic and stochastic chemostat models. J Differ Equations 217: 26-53. 75. Iwasa Y, F Michor, NL Komarova, MA Nowak (2005). Population genetics of tumor suppressor genes.) theor Biol 233: 15-23. 76. Iwasa Y, F Michor, MA Nowak (2005). Virus evolution within patients increases pathogenicity.) theor Biol 232: 17-26. 77. Keenan EL, EP Stabler (2005). Linguistic invariants and language variation. In Logic, Methodology and Philosophy of Science, ed. P Hajck et al. London: Kings College Publications, 395-411. 78. Lee Y, T Collier, C Taylor, EP Stabler (2005). The role of population structure in language evolution. In Proceedings of the 10th International Symposium on Artificial Life and Robotics. 79. Lee Y, T Collier, EP Stabler, C Taylor (2005). Grammar structure and the dynamics of language evolution. In Proceedings of the 8th European Conference on Artificial Lifc. 80. Lieberman E, C Hauert, MA Nowak (2005). Evolutionary dynamics on graphs. Nature 433: 312-316. 81. Lieberman E, C Hauert, MA Nowak (2005). Evolutionary dynamics on graphs. Nature 433: 312-316. 82. Michor F (2005). Chromosomal instability and human cancer. Proc R Soc B 360: 631-635. 83. Michor F, TP Hughes, Y Iwasa, S Branford, NP Shah, CL Sawyers, MA Nowak (2005). Dynamics of chronic myeloid leukemia. Nature 435: 1267-1270. 84. Michor F, Y Iwasa, C Lengauer, MA Nowak (2005). Dynamics of colorectal cancer. Semin Cancer Biol 15: 484-493. 85. Michor F, Y Iwasa, C Lengauer, B Vogelstein, MA Nowak (2005). Can chromosomal instability initiate tumorigenesis? Semin Cancer Biol 15: 43-49. 86. Michor PW, D Mumford (2005). Vanishing geodesic distance on spaces of submanifolds and diffeomorphisms. Documenta Math 10: 217-245. 87. Moret BME, J Tang, T Wamow (2005). Reconstructing phylogenies from gene-content and gene-order data. In Mathematics of Evolution and Phylogeny, ed. 0 Gascuel. Oxford: Oxford University Press, 321-352. Page 4 of 16 EFTA_R1_01519428 EFTA02443862 88. Nakamaru M, Y Iwasa (2005). The evolution of altruism by costly punishment in the lattice structured population: Score-dependent viability versus score-dependent fertility. Evol Ecol Rev 7: 853-870. 89. Nakhlch L, D Ringc, T Warnow (2005). Perfect phylogenctic networks: A new methodology for reconstructing the evolutionary history of natural languages. Language 81: 382-420. 90. Nowak MA, NL Komarova (2005). The evolution of altruism: From game theory to human language. In Spiritual Information, ed. CL Harper. Templeton Foundation Press, 308-314. 91. Nowak MA, K Sigmund (2005). Evolution of indirect reciprocity. Nature 427: 1291-1298. 92. Satake A, ON Bjornstad, Y Iwasa (2005). Invasibility of seed predators on synchronized and intermittent seed production of host plants. In Conceptual Ecology and Invasions Biology: Reciprocal Approaches to Nature, ed. MW Cadotte, SM McMahon, T Fukami. Kluwer, Netherlands: Kluwer Academic Press, 281-298. 93. Slade P, J Wakeley (2005). The structured ancestral selection graph and the many-demes limit. Genetics 169: 1117-1131. 94. Traulsen A, JC Claussen, C Hauert (2005). Coevolutionary dynamics: From finite to infinite populations. Phys Rev Lett 95: 238701. 95. Traulsen A, AM Sengupta, MA Nowak (2005). Stochastic evolutionary dynamics on two levels..1 thcor Biol 235: 393-401. 96. Trivers R (2005). Reciprocal altruism: 30 years later. In Cooperation in Primates and Humans: Mechanisms and Evolution, ed. CP van Schaik, PM Kappeler. Berlin: Springer- Verlag, 67-83. 97. Wakelcy J (2005). The limits of theoretical population genetics. Genetics 169: 1-7. 98. Wedekind C, R Muller (2005). Risk-induced hatching in salmonids. Ecology 86: 2525-2529. 99. Wedekind C, R Muller (2005). The hatchery. B Ecol Soc USA 86: 124-125. 100. Wedekind C, M Walker, TJ Little (2005). The course of malaria in mice: MHC effects, but no general MHC heterozygote advantage in single-strain infections. Genetics 170: 1427- 1430. 101. Willensdorfer M, MA Nowak (2005). Mutation in evolutionary games can increase average fitness at equilibrium. J thcor Biol 237: 355-362. 2006 102. Abbott LH, F Michor (2006). Mathematical models of targeted cancer therapy. Brit J Cancer 95: 1136-1141. 103. Antal T, PL Krapivsky (2006). Flows on graphs with random capacities. Phys Rev E 74: 051110. 104. Brandt H, C Haucrt, K Sigmund (2006). Punishing and abstaining for public goods. P Natl Acad Sci USA 103: 495497. 105. Burger R, KA Schneider (2006). Intraspecific competitive divergence and convergence under assortative mating. Am Nat 167: 190-205. 106. Burger R, KA Schneider, M Willensdorfer (2006). The conditions for speciation through intraspecific competition. Evolution 60: 2185-2206. 107. Burger R, M Willensdorfer, MA Nowak (2006). Why are phenotypic mutation rates much higher than genotypic mutation rates? Genetics 172: 197-206. 108. Boeckx C (2006). Linguistic Minimalism: Origins, Concepts, Methods, and Aims. Oxford/New York: Oxford University Press. 109. Burt A, R Trivers (2006). Genes in Conflict: The Biology of Selfish Genetic Elements. Cambridge, MA: Harvard University Press. 110. Dingli D, F Michor (2006). Successful therapy must eradicate cancer stem cells. Stem Cells 24: 2603-2610. Page 5 of 16 EFTA_R1_01519429 EFTA02443863 III. Dingli D, MA Nowak (2006). Infectious tumor cells. Nature 443: 35-36. 112. Dingli D, JM Pacheco (2006). Allometric scaling of the active hcmatopoictic stem cell pool across mammals. PLoS ONE I: e2. 113. Doebeli M, C Haucrt (2006). The limits of Hamilton's rule..1 Evol Biol 19: 1386-1388. 114. Eldon 8, J Wakeley (2006). Coalescent processes when the distribution of offspring numbcr among individuals is highly skewed. Genetics 172: 2621-2633. 115. Evans SN, D Ringe, T Warnow (2006). Inference of divergence times as a statistical inverse problem. In Phylogenetic Methods and the Prehistory of Languages, ed.. P Forster, C Renfrew. Series eds. C Scarre, DA Kemp. McDonald Institute for Archaeological Research/University of Cambridge, 119-129. 116. Foster KR (2006). The Phoenix effect. Nature 441: 291-292. 117. Fudenberg D, LA Imhof (2006). Imitation processes with small mutations. J Econ Theory 131: 251-262. 118. Fudenberg D, MA Nowak, C Taylor, LA Imhof (2006). Evolutionary game dynamics in finite populations with strong selection and weak mutation. Theor Popul Biol 70: 352-363. 119. Ghirlanda S, M Enquist, M Nakamaru (2006). Cultural evolution develops its own rules: The rise of conservatism and persuasion. Curr Anthro 47: 1027-1034. 120. Haig D (2006). Intragenomic politics. Cytogenet Genome Res 113: 68-74. 121. Haig D (2006). Self-imposed silence: Parental antagonism and the evolution of X- chromosome inactivation. Evolution 60: 440-447. 122. Hauert C (2006). Spatial effects in social dilemmas. J theor Biol 240: 627-636. 123. Haucrt C, M Holmes, M Doebeli (2006). Evolutionary games and population dynamics: Maintenance of cooperation in public goods games. Proc R Soc B 273: 2565-2570. 124. Hauert C, F Michor, MA Nowak, M Doebeli (2006). Synergy and discounting of cooperation in social dilemmas. I theor Biol 239: 195-202. 125. Imhof LA, MA Nowak (2006). Evolutionary game dynamics in a Wright-Fisher process. Math Biol 52: 667-681. 126. Iwasa Y, MA Nowak, F Michor (2006). Evolution of resistance during clonal expansion. Genetics 172: 2557-2566. 127. Matson FA, J Wakeley (2006). Convergence to the island-model coalescent process in populations with restricted migration. Genetics 172: 701-708. 128. Michor F, Y Iwasa, MA Nowak (2006). The age incidence of chronic myeloid leukemia can be explained by a one-mutation model. P Natl Acad Sci USA 103: 14931-14934. 129. Michor F, MA Nowak, Y Iwasa (2006). Evolution of resistance to cancer therapy. Curr Phann Design 12: 261-271. 130. Michor F, MA Nowak, Y Iwasa (2006). Stochastic dynamics of metastasis formation. J theor Biol 240: 521-530. 131. Michor PW, D Mumford (2006). Riemannian geometries on spaces of plane curves. .I Eur Math Soc 8: 1.48. 132. Nowak MA (2006). Evolutionary Dynamics. Cambridge, MA: Harvard University Press. 133. Nowak MA (2006). Five rules for the evolution of cooperation. Science 314: 1560-1563. 134. Nowak MA, F Michor, Y Iwasa (2006). Genetic instability and clonal expansion. J theor Biol 241: 26-32. 135. Ohtsuki H, C Hauert, E Lieberman, MA Nowak (2006). A simple rule for the evolution of cooperation on graphs and social networks. Nature 441: 502-505. 136. Ohtsuki H, Y Iwasa (2006). The leading eight: Social norms that can maintain cooperation by indirect reciprocity. J theor Biol 239: 435-444. 137. Ohtsuki H, MA Nowak (2006). Evolutionary games on cycles. Proc R Soc B 273: 2249- 2256. 138. Ohtsuki H, MA Nowak (2006). The replicator equation on graphs. J thcor Biol 243: 86-97. Page 6 of 16 EFTA_R1_01519430 EFTA02443864 139. Pacheco 3M, A Traulsen, MA Nowak (2006). Active linking in evolutionary games. J theor Biol 243: 437-443. 140. Pacheco JM, A Traulsen, MA Nowak (2006). Coevolution of strategy and structure in complex networks with dynamical linking. Phys Rev Lett 97: 258103. 141. Pfeiffer T, MA Nowak (2006). Climate change: All in the game. Nature 441: 583-584. 142. Pfeiffer T, MA Nowak (2006). Digital cows grazing on digital grounds. Curr Biol 16: R946- R949. 143. Ralicke T, N Guncz, C Wedekind (2006). Early maternal investment in mice: No evidence for 'compatible-genes' sexual selection despite hybrid vigor. J Evol Biol 19: 922-928. 144. Santos FC, JM Pacheco, T Lenaens (2006). Cooperation prevails when individuals adjust their social ties. PLoS Comput Biol 2: e140. 145. Santos FC, JM Pacheco, T Lcnaerts (2006). Evolutionary dynamics of social dilemmas in structured heterogeneous populations. P Natl Acad Sci USA 103: 3490-3494. 146. Taylor C, Y Iwasa, MA Nowak (2006). A symmetry of fixation times in evolutionary dynamics. J theor Biol 243: 245-251. 147. Taylor C, MA Nowak (2006). Evolutionary game dynamics with non-uniform interaction rates. Theor Popul Biol 69: 243-252. 148. Traulsen A, JC Claussen, C Hauert (2006). Coevolutionary dynamics in large but finite populations. Phys Rev E 74: 011901. 149. Traulsen A, MA Nowak (2006). Evolution of cooperation by multilevel selection. P Natl Acad Sci USA 103: 10952-10955. 150. Traulsen A, MA Nowak, .1 Pacheco (2006). Stochastic dynamics of invasion and fixation. Phys Rev E 74: 011909. 151. Traulsen A, .IM Pacheco, L Imhof (2006). Stochasticity and evolutionary stability. Phys Rev E 74: 021905. 152. Trivers R, JT Manning, A Jacobson (2006). A longitudinal study of digit ratio (2D:4D) and other forger ratios in Jamaican children. Horm Bchav 49: 150-156. 153. Wamow T, SN Evans, D Ringe, L Nakhleh (2006). A stochastic model of language evolution that incorporates homoplasy and borrowing. In Phylogenctic Methods and the Prehistory of Languages, eds. P Forster, C Renfrew. Series eds. C Scarre, DA Kemp. McDonald Institute for Archaeological Research/University of Cambridge, 75-87. 2007 154. Antal T, I Bena, M Droz, K Martens, Z Racz (2007). Guiding-fields for phase-separation: Controlling liesegang patterns. Phys Rev E 76: 046203. 155. Antal T, KB Blagoev, SA Trugman, S Ratner (2007). Aging and immortality in a cell proliferation model. J theor Biol 248: 411-417. 156. Antal T, PL Krapivsky (2007). Molecular spiders with memory. Phys Rev E 76: 021121. 157. Antal T, PL Krapivsky, K Mallick (2007). Molecular spiders in one dimension. J Stat Mech- Theory E: P08027. 158. Antal T, PL Krapivsky, S Redner, M Mailman, B Chakraborty (2007). Dynamics of an idealized model of microtubule growth and catastrophe. Phys Rev E 76: 041907. 159. Beerenwinkel N, T Antal, D Dingli, A Traulsen, KW Kinzler, VE Velculescu, B Vogelstein, MA Nowak (2007). Genetic progression and the waiting time to cancer. PLoS Comput Biol 3: e225. 160. Brandt H, H Ohtsuki, Y Iwasa, K Sigmund (2007). A survey of indirect reciprocity. In Mathematics for Ecology and Evolution, eds. Y Takeuchi, Y Iwasa, K Sato. Berlin: Springer, 21-50. 161. Burnham TC (2007). High-testosterone men reject low ultimatum game offers. Proc R Soc B 274: 2327-2330. Page 7 of 16 EFTA_R1_01519431 EFTA02443865 162. Burnham TC, B Hare (2007). Engineering human cooperation. Hum Nat 18: 88-108. 163. Dingli D, F Michor, T Antal, .11.4 Pacheco (2007). The emergence of tumor mctastascs. Cancer Biol Ther 6: e 1 -e8. 164. Dingli D, JM Pacheco (2007). Ontogenic growth of the hacmatopoictic stem cell pool in humans. Proc R Soc B 274: 2497-2501. 165. Dingli D, JM Pacheco, A Dispenzieri, S Hayman, S Kumar, M Lacy, D Gastineau, M Gertz (2007). In vivo and in silico studies on single versus multiple transplants for multiple myeloma. Cancer Sci 98: 734-739. 166. Dingli D, A Traulsen, F Michor (2007). (A)Synunetric stem cell replication and cancer. PLoS Comput Biol 3: e53. 167. Dingli D, A Traulsen, JM Pacheco (2007). Stochastic dynamics of hematopoietic tumor stem cells. Cell Cycle 6: c1-c6. 168. Dingli D, A Traulsen, JM Pacheco (2007). Compartmental architecture and dynamics of hernatopoicsis. PLoS One 2: e345. 169. D'Orsogna MR, T Chou, T Antal (2007). Exact steady-state velocity of ratchets driven by random sequential absorption. J Phys A: Math Theor 40: 5575-5584. 170. Hauert C, A Traulsen, H Brandt, MA Nowak, K Sigmund (2007). Via freedom to coercion: The emergence of costly punishment. Science 316: 1905-1907. 171. Imhof LA, D Fudenberg, MA Nowak (2007). Tit-for-tat or win-stay, lose-shift? J theor Biol 247: 574-580. 172. Iwasa Y, F Michor, MA Nowak (2007). Directional evolution of virus within a host under immune selection. In Mathematics for Life Science and Medicine, cds. Y Takeuchi, Y Iwasa, K Sato. Springer: New York. 173. Lieberman E, JB Michel, J Jackson, T Tang, MA Nowak (2007). Quantifying the evolutionary dynamics of language. Nature 449: 713-716. 174. Lopes J V, JM Pacheco, D Dingli (2007). Acquired hematopoietic stem-cell disorders and mammalian size. Blood 110: 4120-4122. 175. Masuda N, H Ohtsuki (2007). Tag-based indirect reciprocity by incomplete social information. Proc R Soc B 274: 689-695. 176. Nowak MA, S Roch (2007). Upstream reciprocity and the evolution of gratitude. Proc R Soc B 274: 605-609. 177. Nowak MA, K Sigmund (2007). How populations cohere: Five rules for cooperation. In Theoretical Ecology: Principles and Applications, eds. RM May, A McLean. Oxford: Oxford University Press, 7-16. 178. Ohtsuki H. P Bordalo, MA Nowak (2007). The one third law of evolutionary dynamics. J theor Biol 249: 289-295. 179. Ohisuki H, Y Iwasa (2007). Global analyses of evolutionary dynamics and exhaustive search for social norms that maintain cooperation by reputation. J theor Biol 244: 518-531. 180. Ohtsuki H, MA Nowak (2007). Direct reciprocity on graphs. 3 theor Biol 247: 462-470. 181. Ohtsuki H, J Pacheco, MA Nowak (2007). Evolutionary graph theory: Breaking the symmetry between interaction and replacement. J theor Biol 246: 681-694. 182. Ohtsuki H, J Pacheco, MA Nowak (2007). Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs. Phys Rev Lett 98: 108106. 183. Pfeiffer T, R Hoffman (2007). Temporal patterns of genes in scientific publications. P Natl Acad Sci USA 104: 12052-12056. 184. Pinker S (2007). Games people play. In The Stuff of Thought: Language as a Window Into Human Nature. New York: Viking Press. 185. Roehl T, C Roehl, HG Schuster, A Traulsen (2007). The impact of fraud on the mean-field dynamics of cooperative social systems. Phys Rev E 76: 026114. 186. Steiner UK, T Pfeiffer (2007). Optimizing time and resource allocation trade-offs for investment in morphological and behavioral defense. Am Nat 169: 118-129. Page 8 of 16 EFTA_R1_01519432 EFTA02443866 187. Taylor C, J Chen, Y Iwasa (2007). Cooperation maintained by fitness adjustment. Evol Ecol Res 9: 1023-1041. 188. Taylor C, MA Nowak (2007). Transforming the dilemma. Evolution 61: 2281-2292. 189. Traulsen A, Y Iwasa, MA Nowak (2007). The fastest evolutionary trajectory. J theor Biol 249: 617-623. 190. Traulsen A, MA Nowak (2007). Chromodynamics of cooperation in finite populations. PLoS ONE 2: e270. 191. Traulsen A, MA Nowak, J Pacheco (2007). Stochastic payoff evaluation increases the temperature of selection. J theor Biol 244: 349-356. 192. Traulsen A, IM Pacheco, D Dingli (2007). On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria. Stem Cells 25: 3081-3084. 193. Traulsen A, JM Pacheco, MA Nowak (2007). Pairwise comparison and selection temperature in evolutionary game dynamics. J theor Biol 246: 522-529. 194. Uehara T, Y Iwasa, H Ohtsuki (2007). ESS distribution of display duration in animal contests to assess an opponent before fighting or fleeing. Evol Ecol Res 9: 395-408. 195. Wild G, A Traulsen (2007). The different limits of weak selection and the evolutionary dynamics of finite populations. J theor Biol 247: 382-390. 196. Wilknsdorfcr M, R Burger, MA Nowak (2007). Phenotypic mutation rates and the abundance of abnormal proteins in yeast. PLoS Comput Biol 3: e203. 197. Worden L, SA Levin (2007). 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